Post-Undergraduate Research

Stainier Lab
PI: Didier Y. Stainier, PhD
University of California, San Francisco
Department of Biochemistry and Biophysics

High-throughput In Vivo Small Molecule Screen for Beta Cell Regeneration in Transgenic Zebrafish

Diabetes, characterized by elevated blood glucose levels due to insufficient insulin or insulin resistance, often results from the depletion of insulin-producing β cells. While diabetes can be controlled with insulin injections, a curative approach to restore β cell numbers is needed. This study used a zebrafish model of diabetes to screen approximately 7,000 small molecules, identifying enhancers of β cell regeneration that converge on the adenosine signaling pathway. These compounds included exogenous agonists and inhibitors of adenosine degradation. The most potent enhancer, the adenosine agonist 5′-N-ethylcarboxamidoadenosine (NECA), acting through the adenosine receptor A2aa, increased β cell proliferation and accelerated normoglycemia restoration in zebrafish. NECA’s effects were confirmed in diabetic mice, suggesting an evolutionarily conserved role for adenosine in β cell regeneration. Although NECA significantly stimulated β cell proliferation during regeneration, it had only a modest effect during development. This study’s whole-organism screen in diabetic mice identified adenosine pathway components that could be therapeutically targeted to treat diabetes, offering a potential approach to enhance β cell regeneration and improve patient outcomes.

Publication reference: Andersson, O. et al., Cell Metabolism, 2012, 15(6), 885-894.

Positional Cloning Analysis of the Slurpee Zebrafish Mutant

In addition to the high-throughput chemical screen, I also investigated the positional cloning of the Slurpee mutant. The mutant phenotype consisted of a pharyngeal endodermal misspecification and prominent craniofacial defects originating from a single point mutation. Despite the incomplete sequencing of the zebrafish genome at the time, I finally specified a candidate gene, bach2, which is a novel protein similar to human and mouse BTB and CNC homology 1, or basic leucine zipper transcription factor 2. While similar endoderm mutants usually result in a complete loss of endoderm within the organism, the misspecification of slurpee may inform us of critical factors of the pharyngeal endoderm that regulate craniofacial development.